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Calculate mutually exclusive exons from a GRanges object

Source: R/calc_logic.R
calc_mutually_exclusive.Rd

Calculate mutually exclusive exons from a GRanges object

Usage

calc_mutually_exclusive(gr, type = c("in", "over", "boundary"))

Arguments

gr

A GRanges object with exon annotations, including 'tx_id', 'exon', and 'coef_col' metadata columns and preprocessed with preprocess_input().

type

The type of overlap to consider when identifying mutually exclusive exons.

Value

A GRanges object with an additional 'event' metadata column indicating mutually exclusive exons.