Skip to contents

Calculate skipped exons from a GRanges object

Source: R/calc_logic.R
calc_skipped_exons.Rd

Calculate skipped exons from a GRanges object

Usage

calc_skipped_exons(gr, type = c("over", "in", "boundary"))

Arguments

gr

A GRanges object with exon annotations, including 'tx_id', 'exon', and 'coef_col' metadata columns and preprocessed with preprocess_input().

type

The type of overlap to consider when identifying skipped exons.

Value

A GRanges object with an additional 'event' metadata column indicating skipped exons.