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Filter candidates that do not overlap any pos_exons, and are internal Then get the left and right exons for each candidate Return a named list with three GRanges objects: candidates, left_exons, right_exons

Source: R/aux_logic.R
candidates_by_non_overlap_directed.Rd

Filter candidates that do not overlap any pos_exons, and are internal Then get the left and right exons for each candidate Return a named list with three GRanges objects: candidates, left_exons, right_exons

Usage

candidates_by_non_overlap_directed(neg_exons, pos_exons, gr, type)

Arguments

neg_exons

A GRanges object with candidate negative exons (neg_exons)

pos_exons

A GRanges object with positive exons (pos_exons)

gr

The original GRanges object with all exons (for looking up left/right)

type

The type of overlap to consider when identifying matches.

Value

A named list with three GRanges objects: candidates, left_exons, right_exons candidates, left_exons, right_exons are all from neg_exons set