MA plot - log fold change over average counts

MA plot - log fold change over average counts

plotMASwish(y, alpha = 0.05, sigcolor = "blue", ...)

Arguments

y

a SummarizedExperiment (see swish)

alpha

the FDR threshold for coloring points

sigcolor

the color for the significant points

...

passed to plot

Value

nothing, a plot is displayed

Examples

y <- makeSimSwishData()
y <- scaleInfReps(y)
y <- labelKeep(y)
y <- swish(y, x="condition")
plotMASwish(y)