MA plot - log fold change over average counts
plotMASwish.RdMA plot - log fold change over average counts
plotMASwish(y, alpha = 0.05, sigcolor = "blue", ...)Arguments
- y
a SummarizedExperiment (see
swish)- alpha
the FDR threshold for coloring points
- sigcolor
the color for the significant points
- ...
passed to plot
Value
nothing, a plot is displayed
Examples
y <- makeSimSwishData()
y <- scaleInfReps(y)
y <- labelKeep(y)
y <- swish(y, x="condition")
plotMASwish(y)
