Package index • tximeta

Package overview
`tximeta-package`	Import transcript quantification with metadata
Main functions
`tximeta()`	Import transcript quantification with metadata
`summarizeToGene(<SummarizedExperiment>)`	Summarize estimated quantitites to gene-level
Add information to SE
`addCDS()`	Add CDS to rowRanges of a transcript-level SummarizedExperiment
`addExons()`	Add exons to rowRanges of a transcript-level SummarizedExperiment
`addIds()`	Add IDs to rowRanges of a SummarizedExperiment
Retrieve information from SE
`retrieveCDNA()`	Retrieve the cDNA transcript sequence for a SummarizedExperiment
`retrieveDb()`	Retrieve the TxDb or EnsDb associated with a SummarizedExperiment
linkedTxome for custom transcriptomes
`makeLinkedTxome()` `loadLinkedTxome()`	Make and load linked transcriptomes ("linkedTxome")
Other helpers
`splitSE()`	Split SummarizedExperiment by gene categories
`makeDGEList()`	Make a DGEList from tximeta output
`getTximetaBFC()` `setTximetaBFC()`	Get or set the directory of the BiocFileCache used by tximeta

Reference